Complexity Digest 2001.02

08-Jan-2001

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  1. Editor's Note Next Article Bookmark and Share

    1. Several articles have been addressing two of the most fundamental principles of complex systems:
      • Universality: Universal properties do not depend on specific details of the system.
      • Non-Linearity: The whole is more than the sum of its parts.

      In "Evolution Of Universal Grammar" the authors argue that from the limited number of training sentences that a child hears it should theoretically not be able to learn the grammar of its native language to the degree that most children apparently do. The existence of a genetically encoded universal grammar, however, could reduce the learning space sufficiently to explain the observed language learning of children who often don't have any difficulties learning several languages at an early age.

      Two articles in Science (ComDig 2001.3/4) address a similar question about music: Of all the possible sounds that could be generated in the time span of the order of minutes (the typical lengths of songs produced by humans as well as whales and song birds) only a tiny fraction is actually used in what is generally accepted as music. The definition of "music" (or "complexity"), however, has its own problems. For Gray et al. music is "patterns of sound varying in pitch and time produced for emotional, social, cultural, and cognitive purposes". One would have difficulties to prove the "purpose" of, say, a humpback whale song, whereas not everyone would consider the crying of a baby to be especially musical in spite of the clear purpose. These universality properties also would not apply to "modern music" where even the absence of sound -like in John Cage's composition 4'33" consisting of four minutes and thirty-three seconds of silence- is included in the definition.

      On the other hand it is quite astounding that there seem to be a number of universal melodic and rhythmical structures that constrain the sound-space of both to humans and animals like an attractor. Tramo presents a number of fascinating brain-physiological factors that promise to provide a basis for understanding these universality classes that make e.g. babies (as well as rats and starlings) squirm when exposed to dissonant sounds.

      The non-linearity principle of complex systems has found profound manifestations in healthcare issues. Cory-Slechta et al. could show that the combination of two widely used pesticides can be linked to Parkinson's disease whereas each of them individually has no severe health effect. "A Worrisome Side Effect Of An Antianxiety Remedy " describes the non-linear interactions of a natural herb with a number of high-tech pharmaceutical drugs typically reducing or neutralizing their effect.

      It is no surprise that the immune system itself takes advantage of the richness of effects of non-linear interactions in the case of co-stimulation of T-cells. We can expect that these findings will have a profound impact on medical sciences by stressing how complex human bodies are in their response to their environment.

    2. TheScientificWorld.com http://www.thescientificworld.com/ offers a free mail service about scientific publications. Those articles are typically not available in electronic form in their original form but will be scanned and sent electronically for a certain fee. Many of the articles are rather technical and not addressed to a general audience. As an experiment we want to pass on the information about those publications of more general interest by listing their titles in the Links & Snippets section of Complexity Digest. The articles themselves can be retrieved from http://www.thescientificworld.com/ by searching the site for the title.

  2. Evolution Of Universal Grammar, Science Next Article Bookmark and Share

    Abstract: Universal grammar speciÞes the mechanism of language acquisition. It determines the range of grammatical hypothesis that children entertain during language learning and the procedure they use for evaluating input sentences.

    How universal grammar arose is a major challenge for evolutionary biology. We present a mathematical framework for the evolutionary dynamics of grammar learning. The central result is a coherence threshold, which specifies the condition for a universal grammar to induce coherent communication within a population. We study selection of grammars within the same universal grammar and competition between different universal grammars. We calculate the condition under which natural selection favors the emergence of rule-based, generative grammars that underlie complex language.


  3. Origins Of Complex Lexicons: Zipf's Law Revisited, SFI Workig Papers Next Article Bookmark and Share

    Abstract: Zipf's law states that the frequency of a word is a power function of its rank. The exponent of the power is usually accepted to be close to (-1). Great deviations between the predicted and real number of different words of a text, disagreements between the predicted and real exponent of the probability density function and statistics on a big corpus, make evident that word frequency as a function of the rank follows two different exponents, ~ -1 for the first regime and ~-2 for the second. The implications of the change in exponents for the metrics of texts and for the origins of complex lexicons are analyzed.

  4. The Music Of Nature And The Nature Of Music, Science Next Article Bookmark and Share

    Excerpts: Singing humpbacks [ whales, ed.] use rhythms similar to those in our own music, yet they could just as easily formulate free-form, arrhythmic sounds.

    They use phrases of a similar length to ours--a few seconds--and create themes out of several phrases before singing the next theme. (…)

    Whales mix percussive or noisy elements in their songs with relatively pure tones, and do so in a ratio similar to that used by humans in Western symphonic music. (…)

    The tone and timbre of many whale notes are similar to human musical sounds.


  5. Music of the Hemispheres, Science Next Article Bookmark and Share

    Excerpt: There is no "music center" in the brain, no grossly identifiable brain structure that works solely during music cognition. All of the structures that participate in the processing of music contribute to other forms of cognition. For example, the left planum temporale, the pride of musicians with perfect pitch, is also involved in language processing. However, distinctive patterns of neural activity within the auditory cortex and unique connections between the auditory cortex and other areas of the brain may imbue specificity to the processing of music.

  6. Computational Approaches To Brain Function: Learning And Selective Attention, Nature Next Article Bookmark and Share

    Excerpts: When Watson and Crick proposed their model for the double helical structure of DNA, they ended with the famous words, "It has not escaped our notice that the specific pairing we have postulated immediately suggests a possible copying mechanism for the genetic material. Unfortunately, life is not always so simple, and in particular, the structure of the brain -with its 1010 neurons and 1014 synapses- seems unlikely to suggest the mechanism by which it gives rise to behavior. Clearly, some kind of theory is needed if the brain is ever to be understood.

    Although most neuroscientists would accept this position, at least in principle, many experimentalists remain very skeptical of modeling studies. (1)

    Attention is a complex neural and psychological phenomenon, coming in many different forms and involving many different brain structures and mechanisms. Oft-quoted examples include arousal, vigilance and selection. Most empirical studies of attention concentrate on the nature, control and consequences of selection. From the outset, models of selective attention have largely focused on the idea that there might be limited computational resources available to process inputs and choose and execute courses of action. Selective attention is usually conceived as a response to these constraints, in which all but the most important or relevant stimuli for a task are filtered out. (2)

    1. Computational Approaches To Brain Function, Charles Jennings, Sandra Aamodt, , Nature, Volume 3 Number Supp pp 1160, 2000
    2. Learning And Selective Attention, Peter Dayan, Sham Kakade, P. Read, Nature, Volume 3 Number Supp pp 1218 - 1223, 2000

  7. A Worrisome Side Effect Of An Antianxiety Remedy, Science Next Article Bookmark and Share

    Excerpts: (…) FDA issued an official warning to doctors and pharmacists noting that the herb [St. John's wort,ed.] could interfere with dozens of drugs, including the antiseizure medication phenobarbital, the breast cancer drug tamoxifen, the oral contraceptive ethinyl estradiol, and antiretrovirals used to treat AIDS.

    (…) St. John's wort triggers production of an enzyme called CYP3A, which breaks down potential toxins in the liver. In addition to warding off poisons, the CYP3A system also helps to metabolize hormones such as estrogen, testosterone, and their precursors. (1)

    Many scientists suspected that St. John's wort was activating the CYP3A pathway, which would accelerate the breakdown of the other drugs. Intrigued, Kliewer and his Glaxo colleagues decided to test whether St. John's wort was working through the PXR receptor, a protein they had discovered in mice several years earlier and had been intensely studying ever since. Evans and his colleagues knew that PXR, which has a human counterpart known as SXR, triggered production of CYP3A. (2)

    1. A Worrisome Side Effect Of An Antianxiety Remedy, Gretchen Vogel, Science 2001 291: 37
    2. How The Body's 'Garbage Disposal' May Inactivate Drugs, Gretchen Vogel, Science 2001 291: 35-37

  8. Combination Of Two Pesticides Linked To Parkinson's Disease, U. Rochester/Science Daily Next Article Bookmark and Share

    Excerpt: Scientists have shown that the combination of two widely used agricultural pesticides-but neither one alone-creates in mice the exact pattern of brain damage that doctors see in patients with Parkinson's disease. The research offers the most compelling evidence yet that everyday environmental factors may play a role in the development of the disease.

    The latest findings of the team led by Deborah Cory-Slechta, Ph.D., professor of environmental medicine and dean for research at the University of Rochester School of Medicine and Dentistry, appear in the Dec. 15 issue of the Journal of Neuroscience. The scientists caution that more studies are necessary to explain the link, since it's probable that many factors contribute to a complex disease like Parkinson's, and they say it's unlikely that the pesticides on their own actually cause the disease.

    Cory-Slechta's team studied the effects of a mixture of two very common agrichemicals, the herbicide paraquat and the fungicide maneb. Each is used by farmers on millions of acres in the United States alone: Maneb is applied widely on such crops as potatoes, tomatoes, lettuce and corn, and paraquat is used on corn, soybeans, cotton, fruit, and a variety of other products. In the experiment, mice exposed to either one had little or no brain damage, but mice exposed to both share a significant trait with people in the very early stages of the disease: Though they appear healthy, key brain cells known as dopamine neurons are dying. The mice exposed to the mixture carried nearly all of the molecular hallmarks of Parkinson's disease as seen in humans.

    "The environmental reality is that several of these chemicals are used on the same crops and in the same geographical locations. You've got to get rid of the weeds. Then the insects. Then funguses. These are different chemicals that do different things, but they're often applied in the same fields," says Cory-Slechta, who was joined in the research by graduate student Mona Thiruchelvam and faculty members Eric Richfield, Raymond Baggs, and A. William Tank.

    The study is one of the first to examine the effects of such chemicals in tandem. Cory-Slechta notes that current regulations and determinations of safety levels are usually based on the effects of single chemicals. "In the real world, we're exposed to mixtures of chemicals every day. There are thousands upon thousands of combinations; I think what we have found is the tip of the iceberg," she says. "There are a dozen different fungicides related to maneb alone. I don't think we just happened to pick the right chemicals to see such an effect."

    Maneb, paraquat, and many other pesticides are used in the same agriculture-rich areas of the country, including the Midwest, California, Florida and the Northeast. The map of their use mirrors areas of the country where people are more likely to die of Parkinson's disease.

    Several epidemiological studies have hinted at a role for pesticides in the development of the disease. Studies have found that farmers, people who live in rural areas, and people who drink well water are more likely to have the disease than people who don't. In addition, just last month, scientists at Emory University presented evidence that rats given a steady dose of the natural pesticide rotenone, used on home-grown fruits and vegetables, develop Parkinson's-like symptoms. Cory-Slechta's study, which used much lower levels of chemicals than the Emory research, is the first to link a combination of more widely used pesticides to the disease.

    "No one has looked at the effects of studying together some of these compounds that, taken by themselves, have little effect," says Cory-Slechta. "This has enormous implications." (...)


  9. Immunology: It Takes More Than Two To Tango, Nature Next Article Bookmark and Share

    Excerpts: Most T cells of the immune system recognize antigens - substances that stimulate an immune response - as protein fragments. These fragments must be presented to T cells by molecules on the surface of another type of cell, an antigen- presenting cell (APC). But this recognition event alone is not enough to fully activate the T cell. Simultaneous 'co-stimulatory' signals from the APC are needed before the T cell can proliferate and become specialized to perform a particular function, such as secreting intercellular signalling molecules called cytokines. (1)

    To understand the role of ICOS in T-cell activation and function, we generated and analysed ICOS-deficient mice. Here we show that T-cell activation and proliferation are defective in the absence of ICOS. In addition, ICOS -/- T cells fail to produce interleukin-4 when differentiated in vitro or when primed in vivo. ICOS is required for humoral immune responses after immunization with several antigens. ICOS-/- mice showed greatly enhanced susceptibility to experimental autoimmune encephalomyelitis, indicating that ICOS has a protective role in inflammatory autoimmune diseases. (2)

    The co-stimulatory signal promotes T-cell proliferation, lymphokine secretion and effector function. The B7-CD28 pathway provides essential signals for T-cell activation, but does not account for all co-stimulation. We have generated mice lacking ICOS (ICOS-/- ) to determine the essential functions of ICOS. Here we report that ICOS-/- mice exhibit profound deficits in immunoglobulin isotype class switching, accompanied by impaired germinal centre formation. Class switching was restored in ICOS-/- mice by CD40 stimulation, showing that ICOS promotes T-cell/B-cell collaboration through the CD40/CD40L pathway.(3)

    Here we provide in vivo genetic evidence that ICOS delivers a co-stimulatory signal that is essential both for efficient interaction between T and B cells and for normal antibody responses to T-cell-dependent antigens. To determine the physiological function of ICOS, we generated and characterized gene-targeted ICOS-deficient mice. In vivo, a lack of ICOS results in severely deficient T-cell-dependent B-cell responses. Germinal centre formation is impaired and immunoglobulin class switching, including production of allergy-mediating IgE, is defective (4)

    1. Immunology: It Takes More Than Two To Tango, Ronald H. Schwartz, Nature 409, 31 - 32 (2001)
    2. ICOS Co-Stimulatory Receptor Is Essential For T-Cell Activation And Function, Chen Dong, Amy E. Juedes, Ulla-Angela Temann, Sujan Shresta, James P. Allison, Nancy H. Ruddle, Richard A. Flavell, Nature 409, 97 - 101 (2001)
    3. ICOS Is Critical For Cd40-Mediated Antibody Class Switching, Alexander J. Mcadam, Rebecca J. Greenwald, Michele A. Levin, Tatyana Chernova, Nelly Malenkovich, Vincent Ling, Gordon J. Freeman & Arlene H. Sharpe
    4. ICOS Is Essential For Effective T-Helper-Cell Responses, Anna Tafuri, Arda Shahinian, Friedhelm Bladt, Steve K. Yoshinaga, Manel Jordana, Andrew Wakeham, Louis-Martin Boucher, Denis Bouchard, Vera S. F. Chan, Gordon Duncan, Bernhard Odermatt, Alexandra Ho, Annick Itie, Tom Horan, John S. Whoriskey, Tony Pawson, Josef M. Penninger, Pamela S. Ohashi & Tak W. Mak


  10. Atmospheric CO2 Concentrations Over The Last Glacial Termination, Science Next Article Bookmark and Share

    Abstract: A record of atmospheric carbon dioxide (CO 2 ) concentration during the transition from the Last Glacial Maximum to the Holocene, obtained from the Dome Concordia, Antarctica, ice core, reveals that an increase of 76 parts per million by volume occurred over a period of 6000 years in four clearly distinguishable intervals. The close correlation between CO 2 concentration and Antarctic temperature indicates that the Southern Ocean played an important role in causing the CO 2 increase. However, the similarity of changes in CO 2 concentration and variations of atmospheric methane concentration suggests that processes in the tropics and in the Northern Hemisphere, where the main sources for methane are located, also had substantial effects on atmospheric CO 2 concentrations.


  11. The Social Life Of Routers, The Internet Protocol Journal Next Article Bookmark and Share

    Excerpt: We often forget that computer networks are put in place to support human networks--person-to-person exchanges of information, knowledge, ideas, opinions, insights, and advice. This article looks at a technology that was developed to map and measure human networks--social network analysis--and applies some of its principles and algorithms to designing computer networks. And as we see more peer-to-peer (P2P) models of computer-based networks, the P2P metrics in human network analysis become even more applicable.

    Social network analysts look at complex human systems as an interconnected system of nodes (people and groups) and ties (relationships and flows)--much like an internetwork of routers and links. Human networks are often unplanned, emergent systems. Their growth is sporadic and self-organizing. Network ties end up being unevenly distributed, with some areas of the network having a high density of links and other areas of the network sparsely connected. These are called "small world networks". Computer networks often end up with similar patterns of connections--dense interconnectivity within subnetworks, and sparser connections uniting subnetworks into a larger internetwork.


  12. Lessons From The Past: Biotic Recoveries From Mass Extinctions, SFI Workig Papers Next Article Bookmark and Share

    Abstract: Although mass extinctions probably account for the disappearance of less than 5% of all extinct species, the evolutionary opportunities they have created have had a disproportionate effect on the history of life. Theoretical considerations and simulations have suggested that the empty niches created by a mass extinction should refill rapidly after extinction ameliorates. Under logistic models, this biotic rebound should be exponential, slowing as the environmental carrying capacity is approached. Empirical studies reveal a more complex dynamic, including positive feedback and exponential growth phase during recoveries. Far from a model of refilling ecospace, mass extinctions appear to cause a collapse of ecospace, which must be rebuilt during the recovery. Other generalities include the absence of a clear correlation between the magnitude of extinction and the pace of recovery, or the resulting ecological and evolutionary disruption; the presence of a survival interval, with few originations, immediately following an extinction and preceding the recovery phase; and the presence of many lineages which persist through an extinction event only to disappear during the subsequent recovery. Several recoveries encompass numerous missing lineages, groups which are found before the extinction, then later in the recovery, but are missing during the initial survival-recovery phase. The limited biogeographic studies of recoveries suggest considerable variability between regions.

  13. A Statistical Analysis Of Log-Periodic Precursors To Financial Crashes, arXiv Next Article Bookmark and Share

    Abstract: Motivated by the hypothesis that financial crashes are macroscopic examples of critical phenomena associated with a discrete scaling symmetry, we reconsider the evidence of log-periodic precursors to financial crashes and test the prediction that log-periodic oscillations in a financial index are embedded in the conditional expectation function of this index. In particular, we examine the first differences of the logarithm of the S&P 500 prior to the October 87 crash and find the log-periodic component of this time series is not statistically significant if we exclude the last year of data before the crash. We also examine the claim that two separate mechanisms are responsible for draw downs in the S&P 500 and find the evidence supporting this claim to be unconvincing.

  14. Correlation Effects In A Simple Small-World Network, arXiv Next Article Bookmark and Share

    Abstract: We analyze correlation effects in a simple model of small world networks, first introduced in cite{dm}, which is a ring of N sites connected randomly to a distinguished site at the center. Any two sites connected in this way are interpreted to be connected by a shortcut. We enter correlations into this model by taking these random connections from an Ising distribution on the ring. We will show that correlations tend to decrease the small world effect.


  15. The Melting-Pot That Is Alife, Nature Book Report Next Article Bookmark and Share

    Excerpt: The credo of 'artificial life' (ALife) aficionados is that life is about function, not form. Or, put another way, what separates the living from the dead is not a matter of matter but resides in patterns of information. Here on Earth, these patterns of information happen to manifest themselves in various arrangements of chemical elements such as carbon, oxygen, phosphorus and nitrogen. But it could have been otherwise, say the ALifers, and life can just as easily be created in bits and bytes inside structures of silicon (...)
    • The Melting-Pot That Is Alife, Nature Book Report, John L. Casti, Nature 409, 17 - 18 (2001)
    • Creation: Life and How to Make It, Steve Grand , Weidenfeld & Nicolson: 2000. 230 pp

  16. Links & Snippets Next Article Bookmark and Share

    1. 1 Titles in Pub Alert Bookmark and Share

      These references can be found in http://www.thescientificworld.com/
      • A Visuomotor Reaction Time Task Increases The Irregularity And Complexity Of Inspiratory Airflow Pattern In Man, Zhang, T.; Turner, D.,Neuroscience Letters
      • Connectivity And Complexity: The Relationship Between Neuroanatomy And Brain Dynamics, Sporns, O.; Tononi, G.; Edelman, G. M., Neural Networks-Oxford-
      • Brain Electric Correlates Of Strong Belief In Paranormal Phenomena: Intracerebral EEG Source And Regional Omega Complexity Analyses, Pizzagalli, D.; Lehmann, D.; Gianotti, L.; Koenig, T.; Tanaka, H.; Wackermann, J.; Brugger, P., Psychiatry Research
      • The Complexity Of Tall Building Facades, Heath, T.; Smith, S.; Lim, B.,Journal Of Architectural And Planning Research
      • Cell Signaling: A Spider's Web Of Architectural Beauty And Complexity, Cerione, R. A., Cell -Cambridge Ma-
      • On Complexity And Lotteries' Evaluation - Three Experimental Observations, Mador, G.; Sonsino, D.; Benzion, U., Journal Of Economic Psychology
      • Multi-Stakeholder Benchmarking : Clarifying Attitudes And Behaviour From Complexity And Ambiguity, Woodhead (A. C.); Cornish (P. S.); Slavich (P.G.), Australian Journal Of Experimental Agriculture

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