mx.unam.iimas.griffin.grn.models

Class AzpeitiaModel08

java.lang.Object

mx.unam.iimas.griffin.grn.BooleanGeneRegulatoryNetwork

mx.unam.iimas.griffin.grn.models.AzpeitiaModel08

All Implemented Interfaces:

AzpeitiaModel

public class AzpeitiaModel08
extends BooleanGeneRegulatoryNetwork
implements AzpeitiaModel

Azpeitia, E., Weinstein, N., Benítez, M., Mendoza, L., and Alvarez-Buylla, E. R. (2013). Finding missing interactions of the Arabidopsis thaliana root stem cell niche gene regulatory network. Frontiers in plant science, 4. Model 8

Version:

1.0

Author:

Stalin Muñoz Gutiérrez (stalinmunoz@yahoo.com)

Constructor Summary

Constructors

Constructor and Description
AzpeitiaModel08() Creates an instance of model 8

Method Summary

Modifier and Type	Method and Description
java.util.Set<Gene>	getGenes() Obtains the set of genes
java.util.Set<BooleanNetworkState>	getStable(java.util.Set<Gene> genes) Obtains the stable states for the network

Methods inherited from class mx.unam.iimas.griffin.grn.BooleanGeneRegulatoryNetwork

getTransitionRuleOf, getTransitionRules, toString

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

AzpeitiaModel08

public AzpeitiaModel08()

Creates an instance of model 8

Method Detail

getGenes

public java.util.Set<Gene> getGenes()

Obtains the set of genes

Overrides:

getGenes in class BooleanGeneRegulatoryNetwork

Returns:

the genes

getStable

public java.util.Set<BooleanNetworkState> getStable(java.util.Set<Gene> genes)

Obtains the stable states for the network

Specified by:

getStable in interface AzpeitiaModel

Parameters:

genes - the genes

Returns:

the states