Constant Field Values

Contents

• mx.unam.*

mx.unam.*

mx.unam.iimas.griffin.grn.code.EncoderUtil

Modifier and Type	Constant Field	Value
public static final java.lang.String	REGEXP_REGULATION_VARIABLE	"__R__(?<sign>.*)__(?<regulator>.*)__(?<regulated>.*)"
public static final java.lang.String	REGULATED	"regulated"
public static final java.lang.String	REGULATOR	"regulator"
public static final java.lang.String	SEPARATOR	"__"
public static final java.lang.String	SIGN	"sign"

mx.unam.iimas.griffin.grn.explorer.io.FileRegExp

Modifier and Type	Constant Field	Value
public static final java.lang.String	ASSIGNMENT_STATEMENT	"(?<left>^[^=]+)=(?<right>.+$)"
public static final char	ASTERISK	42
public static final java.lang.String	BOOLEAN_STATE	"[0-1\\*]{@}"
public static final java.lang.String	GENE	"gene"
public static final java.lang.String	GENERALIZED_INTERACTION	"(?<acronym>(MPU|MPPA|MNU|MNPA|MUSU|MUSPA|MA|OPU|OPPA|ONU|ONPA|OUSU|OA|NR|U))(?<interactionlist>\\[[^,]*\\])"
public static final java.lang.String	INPUT	"input"
public static final java.lang.String	INPUT_OUTPUT_PAIR	"(?<input>[0-1\\*]{@})\\s*\\-\\>\\s*(?<output>[0-1\\*]{@})"
public static final java.lang.String	INTERACTION_ACRONYM	"acronym"
public static final java.lang.String	INTERACTION_LIST	"interactionlist"
public static final java.lang.String	INTERACTION_PAIR	"(?<source>([a-zA-Z0-9]+([_/]+[a-zA-Z0-9]+)*)+?)\\s*:\\s*(?<target>([a-zA-Z0-9]+([_/]+[a-zA-Z0-9]+)*)+?)"
public static final java.lang.String	INTERACTION_TYPES	"(MPU|MPPA|MNU|MNPA|MUSU|MUSPA|MA|OPU|OPPA|ONU|ONPA|OUSU|OA|NR|U)"
public static final java.lang.String	LEFT	"left"
public static final java.lang.String	LITERAL	"literal"
public static final java.lang.String	LITERAL_LIST	"literallist"
public static final java.lang.String	NEGATED_BOOLEAN_STATE	"~[0-1\\*]{@}"
public static final java.lang.String	NEGATIVE_REGULATION	"(?<source>([a-zA-Z0-9]+([_/]+[a-zA-Z0-9]+)*)+?)\\s*\\-\\|\\s*(?<target>([a-zA-Z0-9]+([_/]+[a-zA-Z0-9]+)*)+?)"
public static final char	ONE	49
public static final java.lang.String	OUTPUT	"output"
public static final java.lang.String	PLACE_HOLDER	"@"
public static final java.lang.String	POSITIVE_REGULATION	"(?<source>([a-zA-Z0-9]+([_/]+[a-zA-Z0-9]+)*)+?)\\s*\\->\\s*(?<target>([a-zA-Z0-9]+([_/]+[a-zA-Z0-9]+)*)+?)"
public static final java.lang.String	RIGHT	"right"
public static final java.lang.String	RULE	"rule"
public static final java.lang.String	SINGLE_LINE_COMMENT	"\\s*#.*"
public static final java.lang.String	SOURCE	"source"
public static final java.lang.String	TARGET	"target"
public static final java.lang.String	UPDATE_RULE	"(?<gene>([a-zA-Z0-9]+([_/]+[a-zA-Z0-9]+)*)+?)\\s*\\<\\-\\s*(?<rule>[^,\\}]+)"
public static final char	ZERO	48

mx.unam.iimas.griffin.grn.util.DubrovaAttractors

Modifier and Type	Constant Field	Value
public static final java.lang.String	VAR_SEPARATOR	"___"
public static final java.lang.String	ZERO	"0"

mx.unam.iimas.griffin.logic.parser.SimpleBooleanExpressionParser

Modifier and Type	Constant Field	Value
public static final java.lang.String	VARIABLE_REGEXP	"([a-zA-Z0-9]+([_/]+[a-zA-Z0-9]+)*)+?"